PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62017204-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

bHLH

Protein Properties

Length: 317aa MW: 35423.7 Da PI: 4.8765

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62017204-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30	9.6e-10	130	176	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++Er+RR+ + + f L +lP + kK +K +iL +A++++k+Lq AUR62017204-RA 130 DHIIAERKRRELLSQMFISLSAILPGL-----KKIDKTSILGEAIKHLKELQ 176 699**********************.....9****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 317 aa Download sequence
MDAWLAELEI DMGTIDSLIN NPYDEQSVMD MESSFEEQLA ATFFDTASPQ GDIECNVIEQ 60 YISSPPIPDI SENHDDNNDN INNKNDNDNN IVSSNVQERQ PSKTKQKTKK QAMSTSHAPK 120 RKRQPSQVQD HIIAERKRRE LLSQMFISLS AILPGLKKID KTSILGEAIK HLKELQEKVK 180 VLESEVAKRT VESVVLFKGI ANDNVSSSST VEDYGGNGSS GSSDDDGGNN NSSDSFLEIE 240 VKVLEKTILL RVYCEKRKEI LAKLFAEVDK HHLVITNFSV IPFENLALNI TIVAQMERGF 300 NKNVREFATT LRNALH*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	120	139	KRKRQPSQVQDHIIAERKRR
2	120	161	KRKRQPSQVQDHIIAERKRRELLSQMFISLSAILPGLKKIDK
3	121	140	KRKRQPSQVQDHIIAERKRR
4	135	140	ERKRRE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	1e-42	bHLH family protein