PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62017185-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family RAV
Protein Properties Length: 361aa    MW: 41099.8 Da    PI: 8.3282
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62017185-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2353.6e-114895154
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54
                    s+ykGV +   +g W A+I+       +  r++lg+f t+  Aa+a++ a+ kl+
  AUR62017185-RA 48 SKYKGVVYQQ-NGHWGAQIYA------NhHRIWLGTFKTEATAAAAYDSAAIKLR 95
                    89****9988.8******999......44**********99***********997 PP
2B383.61.8e-26174276184
                     EEEE-..-HHHHTT-EE--HHH.HTT...................---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--T CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...................ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLke 76 
                     f k+ltpsdv+k++rlv+pk++a ++                   gg++ ++++l+++d + +sW+++++y+k+s+++v+t+GW++Fv+ ++L++
  AUR62017185-RA 174 FRKELTPSDVGKLNRLVIPKRYAIKYfpvkdnngrkfgvcegeeeGGDQGGDMELIFYDNTMKSWNFRYCYWKSSQSFVFTRGWNKFVRVKELEA 268
                     89**************************************9999988889********************************************* PP

                     T-EEEEEE CS
              B3  77 gDfvvFkl 84 
                     +D+v+F+ 
  AUR62017185-RA 269 KDIVTFYT 276
                     ******93 PP
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    
MEEERMSSTM TKAEASDSNS SNSQPKRPNT VNRPNTVDRP NRQHGGSSKY KGVVYQQNGH  60
WGAQIYANHH RIWLGTFKTE ATAAAAYDSA AIKLRHGNSG DAHRNFPWTA LTIYEPNFQA  120
HYSTDQVLNM IKDGSYQTKF GEYLSSISQV SNVQTSNNHN SMNKQEGYYC QELFRKELTP  180
SDVGKLNRLV IPKRYAIKYF PVKDNNGRKF GVCEGEEEGG DQGGDMELIF YDNTMKSWNF  240
RYCYWKSSQS FVFTRGWNKF VRVKELEAKD IVTFYTCEFR ENEANDVKKF WMIEVVKCNK  300
ENVENVAKNN NVVDKEKGIL HGSELSLVQG EAVETKKNKG LKLFGVQLVP ASCDEDTSNQ  360
*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.11e-84RAV family protein