PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62016213-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

NAC

Protein Properties

Length: 390aa MW: 44124.9 Da PI: 5.052

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62016213-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	107.6	1.5e-33	12	150	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykv..ePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 lppG+rF+P +el+++yLk+k++g +l++ + i+e+d ++v P+dL + + ++++k+wyfF++r++ky++gkr+ r++ +gyWkatg d AUR62016213-RA 12 LPPGYRFEPYTKELINHYLKPKINGFDLPM-NPIHEIDHINVygGPEDLTAkfkpQGNGKNKKWYFFTSRNRKYKNGKRPDRTAGDGYWKATGID 105 79***********************999.789999765554588535444445778***************************** PP NAM 90 kevlskkgelvglkktLvfy......kgrapkgektdWvmheyrl 128 k+v++ +g+l+g ++ Lv++ k+++ k ekt+W m e r+ AUR62016213-RA 106 KPVKDDDGTLIGHQRALVYFkinpnkKNKDDKDEKTQWHMLELRV 150 ****************88777667888899****99875 PP

Sequence ? help Back to Top
Protein Sequence Length: 390 aa Download sequence
MEKKPGESFD NLPPGYRFEP YTKELINHYL KPKINGFDLP MNPIHEIDHI NVYGGPEDLT 60 AKFKPQGNGK NKKWYFFTSR NRKYKNGKRP DRTAGDGYWK ATGIDKPVKD DDGTLIGHQR 120 ALVYFKINPN KKNKDDKDEK TQWHMLELRV RDDEPKVTPK RKRDHQDCTS MVLDYVIYRI 180 HHKEVAKKEK KAVQVAENEE AEIPNTEANV NNHEQEINNE GAPVPHYDPS INNYLLDDPS 240 VNNNYYNTNS SSNTFFDTNS NYQFLGYDYE LVNNNNLIDG SNIQCDSIYG GLQDLVPGLN 300 LPCNSIYGDF QDLGSDSYLQ CNSIYGGVQD LMPSSNLPCN SIYGGLPDLM PDSNLQCNSI 360 YGVVQDLVPD SNLPCNSIYG GLVPDSSSV*

Sequence ? help Back to Top

Protein Sequence Length: 390 aa Download sequence

MEKKPGESFD NLPPGYRFEP YTKELINHYL KPKINGFDLP MNPIHEIDHI NVYGGPEDLT  60
AKFKPQGNGK NKKWYFFTSR NRKYKNGKRP DRTAGDGYWK ATGIDKPVKD DDGTLIGHQR  120
ALVYFKINPN KKNKDDKDEK TQWHMLELRV RDDEPKVTPK RKRDHQDCTS MVLDYVIYRI  180
HHKEVAKKEK KAVQVAENEE AEIPNTEANV NNHEQEINNE GAPVPHYDPS INNYLLDDPS  240
VNNNYYNTNS SSNTFFDTNS NYQFLGYDYE LVNNNNLIDG SNIQCDSIYG GLQDLVPGLN  300
LPCNSIYGDF QDLGSDSYLQ CNSIYGGVQD LMPSSNLPCN SIYGGLPDLM PDSNLQCNSI  360
YGVVQDLVPD SNLPCNSIYG GLVPDSSSV*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	160	190	KRKRDHQDCTSMVLDYVIYRIHHKEVAKKEK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04070.2	1e-27	NAC family protein