PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62016055-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

TCP

Protein Properties

Length: 515aa MW: 55593.8 Da PI: 8.5368

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62016055-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	117.4	1.8e-36	61	137	3	80
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaessss 80 ++k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++ti WLl+ a+pai+e+tgt++++a ++ +++ AUR62016055-RA 61 VRKRPSKDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIKWLLERAEPAIIEATGTGTIPAIAV-SVNGTL 137 79**************************************************************9999555.222222 PP

Sequence ? help Back to Top
Protein Sequence Length: 515 aa Download sequence
MEDEENNSSS NNDTNSRNSG DFPATDPLPP VDHSKSTAII PAALKVEPTD AVTLASPPPL 60 VRKRPSKDRH TKVEGRGRRI RMPAACAARI FQLTRELGHK SDGETIKWLL ERAEPAIIEA 120 TGTGTIPAIA VSVNGTLKIP TTSSGKDEDD YGGKKRRRTN NSDFVDMADV GVGSGVTLSS 180 GLAPIMPATA ALGFTAAQAP GPPPQGLVPL WPANFFMVPN AAGGGQQAQF WAAPVFGLAT 240 RPINNFVSEV VPGMGLSGGR NETSVGPSSD STDDNLAEKD GPPNISLRAY YVIDKAKAKL 300 EKACPQIVSC ADITAIAARD VVNLAGGPYW NVLKGRKDGK ISRANETLDL PTPSFDATKL 360 IKLFSKKGLG IKDLVTLSGA HTLGFSHCSS FKARIHRFDD NFDMDPSMDI MFANTLKQKC 420 ANKHNRDNNS GYYLDSTSSV FDNEYYKRLV ARKGVLATDQ ALYNDYRTKF LVESYARYEA 480 LFFIEFAASM VKLGNLGVND HHHGEVREKC RFVN*

Sequence ? help Back to Top

Protein Sequence Length: 515 aa Download sequence

MEDEENNSSS NNDTNSRNSG DFPATDPLPP VDHSKSTAII PAALKVEPTD AVTLASPPPL  60
VRKRPSKDRH TKVEGRGRRI RMPAACAARI FQLTRELGHK SDGETIKWLL ERAEPAIIEA  120
TGTGTIPAIA VSVNGTLKIP TTSSGKDEDD YGGKKRRRTN NSDFVDMADV GVGSGVTLSS  180
GLAPIMPATA ALGFTAAQAP GPPPQGLVPL WPANFFMVPN AAGGGQQAQF WAAPVFGLAT  240
RPINNFVSEV VPGMGLSGGR NETSVGPSSD STDDNLAEKD GPPNISLRAY YVIDKAKAKL  300
EKACPQIVSC ADITAIAARD VVNLAGGPYW NVLKGRKDGK ISRANETLDL PTPSFDATKL  360
IKLFSKKGLG IKDLVTLSGA HTLGFSHCSS FKARIHRFDD NFDMDPSMDI MFANTLKQKC  420
ANKHNRDNNS GYYLDSTSSV FDNEYYKRLV ARKGVLATDQ ALYNDYRTKF LVESYARYEA  480
LFFIEFAASM VKLGNLGVND HHHGEVREKC RFVN*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45680.1	2e-52	TCP family protein