PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62014013-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

bHLH

Protein Properties

Length: 334aa MW: 37214.9 Da PI: 4.8164

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62014013-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.4	6.2e-09	129	175	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++Er+RR+ + + f L ++P + kK +K ++L +A++++k+Lq AUR62014013-RA 129 DHIIAERKRRELLSQLFISLSAIVPGL-----KKIDKTSVLGEAIKHMKELQ 175 699**********************.....9****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence
MSSTMTMDAW LAELEMEMDT IPSLINSHCE QSGTMEAAAF DEQLAATLAD NFPYSLYDTS 60 DATSPQGDFE CNNVIEQFIS TPLISETSEN HTDVEEMSQP PKTKEETKKK QAVSSGGAKR 120 KRQPSQVQDH IIAERKRREL LSQLFISLSA IVPGLKKIDK TSVLGEAIKH MKELQEKVKV 180 LESVIAKRTM ESVVLVKKSN LMFDEGSSDD NASSSTTVDD YCRSSNNDDG DSSSDSLPEV 240 EVKILGKSLL LRVYCGQQKD ILVKLFAEID KHHLSITNFS VIPFENLAQD ITIVAKMERG 300 FNKNVKDFVR TLHNALHLAS CQRFDFNQNE YSS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	108	122	KKKQAVSSGGAKRKR
2	119	133	KKKQAVSSGGAKRKR
3	119	160	KRKRQPSQVQDHIIAERKRRELLSQLFISLSAIVPGLKKIDK
4	120	134	KKKQAVSSGGAKRKR
5	134	139	ERKRRE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	4e-48	bHLH family protein