PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AUR62012259-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
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Family | C3H | ||||||||
Protein Properties | Length: 522aa MW: 56263.1 Da PI: 8.0764 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24.9 | 3.4e-08 | 183 | 203 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f + G Ck G+ C FaHg AUR62012259-RA 183 PCPEFKK-GSCKKGEDCEFAHG 203 8******.*************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 522 aa Download sequence |
MGMDIAQEQV CNNTSTLLEY AASDDVTSFK LAVESGGVPI DEVGVWYTRR IGSSKMAYEE 60 RTPLMIAAQF GSENILDFVL QFGGESVDVN RVSGSDRVTA LHCAVAGGSH NSAYVVHRLI 120 SASANTNIVD ANVYGSDDFR MYCFKIKPCS RAYTHDWTEC PFAHPGENAR RRDPKKYQYT 180 CVPCPEFKKG SCKKGEDCEF AHGVFESWLH PAQYRTRLCK DEIGCARKVC FFAHKREELR 240 PVYASTGSAI PDVSVSSSPN GGFSCTSTPP MSPSFAPLSP GNGASAGAGG MYQGKSGFGV 300 TPPNLQLPGS RLRPSPRWNN NNMGRANDMV QATNLESAFA SINVARKMSP PSVLDSPLNS 360 PRKLSPPRAL DSPKSMAAAM LNSRAAAFVK RSQSFIDRTA PGSPMGGNMS SPMSTPMSNW 420 GSPNGTLDWG IHGEELNKLR KSNSFGFRGA NNNANATRTS PPGFNEPDVS WVNSLVKDEA 480 GAGFLGARSQ SYVRSGAGNG AQGQEMCLPW EQMYIEEQLV N* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40140.2 | 1e-108 | C3H family protein |