PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62010367-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

C3H

Protein Properties

Length: 744aa MW: 82730.1 Da PI: 5.2884

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62010367-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.3	9.9e-07	140	159	10	26
GGTS...--TTTTT-SS-SS CS zf-CCCH 10 artG...tCkyGdrCkFaHg 26 artG C+yGd+C+F+H+ AUR62010367-RA 140 ARTGdisSCNYGDKCRFSHD 159 78888889***********7 PP

Sequence ? help Back to Top
Protein Sequence Length: 744 aa Download sequence
MDESQTEPAN SQTTHPLELS PTSMDESQTK PASTELTQSA MDESEPEVTN TENNEPPSEP 60 ETATGTQPSP EELMAKGVAP VKKEFLRPPP TSRCVTSDEN GKSDKSKSSG VVVEKKSKRQ 120 LKRERHEKLK SALNLCPAIA RTGDISSCNY GDKCRFSHDL EAYKIERPAD LEGECPFIYA 180 QKPCPYGVTC RFYGTHKDVL NDNLDALKED SEVNMLKKDV QKLLWKNKIK FPKSNVALKQ 240 LGVEIRYCLL VSCDLPGAPW GRGHTRVKDS EEEESIAPKV SNGSHCSEDK GCEKYDSADT 300 QDPSAVLPEE PLDDGILGSD DKRPLKKSKS GDDERDSSND LNNGSSVSGE GLVKDSTEDK 360 PPSTNNCLPL EADASLKLLP RERKLIDFRG KLYLAPLTTV GNLPFRRVCK DFGADVTCGE 420 MAMCTNLLEG QASEWALLRR HKSEDLFGVQ ICGAYPDTVA RAVELIDQEC SLDFIDINMG 480 CPIDLVVNKG AGSALLTKPL RMKNVIQAAC ASAERPITVK VRTGYVEGRN RADSLISQIY 540 EWGASALTIH GRSRQQRYSK AADWDYINTC VSKAPSTFQV LGNGDVFSYT DWNKHFSDCP 600 ELSSCMIARG ALVKPWLFTE IKEQRHWDIS SGERLDILRD YVRFGLEHWG SDSKGVETTR 660 FFLLQWLSYT FRYIPVGLLD VIPQKINWRP PSYYGRNDLE TLMASESAAD WIRISEMLLG 720 KVPPDFKFAP KHKSNAYDST ENG*

Sequence ? help Back to Top

Protein Sequence Length: 744 aa Download sequence

MDESQTEPAN SQTTHPLELS PTSMDESQTK PASTELTQSA MDESEPEVTN TENNEPPSEP  60
ETATGTQPSP EELMAKGVAP VKKEFLRPPP TSRCVTSDEN GKSDKSKSSG VVVEKKSKRQ  120
LKRERHEKLK SALNLCPAIA RTGDISSCNY GDKCRFSHDL EAYKIERPAD LEGECPFIYA  180
QKPCPYGVTC RFYGTHKDVL NDNLDALKED SEVNMLKKDV QKLLWKNKIK FPKSNVALKQ  240
LGVEIRYCLL VSCDLPGAPW GRGHTRVKDS EEEESIAPKV SNGSHCSEDK GCEKYDSADT  300
QDPSAVLPEE PLDDGILGSD DKRPLKKSKS GDDERDSSND LNNGSSVSGE GLVKDSTEDK  360
PPSTNNCLPL EADASLKLLP RERKLIDFRG KLYLAPLTTV GNLPFRRVCK DFGADVTCGE  420
MAMCTNLLEG QASEWALLRR HKSEDLFGVQ ICGAYPDTVA RAVELIDQEC SLDFIDINMG  480
CPIDLVVNKG AGSALLTKPL RMKNVIQAAC ASAERPITVK VRTGYVEGRN RADSLISQIY  540
EWGASALTIH GRSRQQRYSK AADWDYINTC VSKAPSTFQV LGNGDVFSYT DWNKHFSDCP  600
ELSSCMIARG ALVKPWLFTE IKEQRHWDIS SGERLDILRD YVRFGLEHWG SDSKGVETTR  660
FFLLQWLSYT FRYIPVGLLD VIPQKINWRP PSYYGRNDLE TLMASESAAD WIRISEMLLG  720
KVPPDFKFAP KHKSNAYDST ENG*