PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62009484-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

MIKC_MADS

Protein Properties

Length: 568aa MW: 64259.7 Da PI: 8.5114

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62009484-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	91.4	4.4e-29	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+ rqvtfskRr g+lKKA+E+SvLCdaeva+i+fs++gkl+ey+s AUR62009484-RA 9 KRIENKISRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYAS 59 79***********************************************86 PP
2	K-box	87.9	1.9e-29	85	177	7	99
K-box 7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 ++ e++++ s+ e+ kL +++e Lqr+ Rh++Ged + Lsl+eLq+LeqqL+ +lk+iRskKn+l++e+i++l kkek++qe+n++L+k ++ AUR62009484-RA 85 TDSESQQEGSWAMEYPKLVARLEVLQRNMRHYVGEDTDALSLRELQHLEQQLDIALKRIRSKKNQLMHESISQLHKKEKAMQEQNNQLSKLMK 177 457889999*******************************************************************************98766 PP

Sequence ? help Back to Top
Protein Sequence Length: 568 aa Download sequence
MGRGKVELKR IENKISRQVT FSKRRSGLLK KAHEISVLCD AEVALIVFST KGKLFEYAST 60 DSSSMERILE RYERYCYAER QLVATDSESQ QEGSWAMEYP KLVARLEVLQ RNMRHYVGED 120 TDALSLRELQ HLEQQLDIAL KRIRSKKNQL MHESISQLHK KEKAMQEQNN QLSKLMKEND 180 KKVEEPQKDD QNPSQLFMLP TSNPFSFPAL TIGGAYQEMR ELEEQANPEA EIPARTNTNI 240 PAWMFSHVMA IQSSKIAIPF RPLLGQLVDC LNFPKPIYGF IDKDRNNACV RIRTNCGKSE 300 FVFFGGEANT VQESQERVAQ KAVQKLMSQF GVQVSDFTSD RARMYQLCNK LFKHKVVELC 360 REKGIEMPTA QKNLGKKPSN EVIHVTIDFV SFLGAVVTRT GAEVSPLETI WVEDLGFVSW 420 LTVSCPHNGA EMECIYSDPC PEVTGAKQKA AKRAIHYLVT KYSLEIIDAN YGAALEKSVA 480 CNAFKSRFYQ LKEHLAAREE NFAGDECLTP TSERFRIPKV GVPPPAPMKR RSATPLDAAS 540 SSTIRVSEPL VSGIPELETV WKRTKFA*

Sequence ? help Back to Top

Protein Sequence Length: 568 aa Download sequence

MGRGKVELKR IENKISRQVT FSKRRSGLLK KAHEISVLCD AEVALIVFST KGKLFEYAST  60
DSSSMERILE RYERYCYAER QLVATDSESQ QEGSWAMEYP KLVARLEVLQ RNMRHYVGED  120
TDALSLRELQ HLEQQLDIAL KRIRSKKNQL MHESISQLHK KEKAMQEQNN QLSKLMKEND  180
KKVEEPQKDD QNPSQLFMLP TSNPFSFPAL TIGGAYQEMR ELEEQANPEA EIPARTNTNI  240
PAWMFSHVMA IQSSKIAIPF RPLLGQLVDC LNFPKPIYGF IDKDRNNACV RIRTNCGKSE  300
FVFFGGEANT VQESQERVAQ KAVQKLMSQF GVQVSDFTSD RARMYQLCNK LFKHKVVELC  360
REKGIEMPTA QKNLGKKPSN EVIHVTIDFV SFLGAVVTRT GAEVSPLETI WVEDLGFVSW  420
LTVSCPHNGA EMECIYSDPC PEVTGAKQKA AKRAIHYLVT KYSLEIIDAN YGAALEKSVA  480
CNAFKSRFYQ LKEHLAAREE NFAGDECLTP TSERFRIPKV GVPPPAPMKR RSATPLDAAS  540
SSTIRVSEPL VSGIPELETV WKRTKFA*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60910.1	2e-82	MIKC_MADS family protein