PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62008388-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

TCP

Protein Properties

Length: 319aa MW: 32483.2 Da PI: 10.456

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62008388-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	133.6	1.8e-41	60	172	1	109
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg...kaa 91 aa+k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++ + s +ss+s+ s + +++ AUR62008388-RA 60 AAPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSSLSVPsqlRSS 154 689*******************************************************************9998777777777766666555555 PP TCP 92 ksaakskksqksaasaln 109 +s +++++++ +as +n AUR62008388-RA 155 SSYFSPNFTTAASASRRN 172 555555555555555544 PP

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence
MLLEKKEEEA CSSSTPFNPS LAISPSGGSG PGPSTSAGPP QAQPPVGGGE SSSGPNSKKA 60 APKRTSTKDR HTKVDGRGRR IRMPALCAAR VFQLTRELGH KSDGETIEWL LQQAEPAVIA 120 ATGTGTIPAN FTSLNISLRS SGSSLSVPSQ LRSSSSYFSP NFTTAASASR RNFFAGIGLS 180 SDTSPSSALL NFQTATLNLN PGLLQAKQEC GGGRKRRLEG EYGAAAAAGA GGYGQIPNFW 240 MVTNGGNQGA AAAAAVMSGD PIWTIPSVNN SAGLYRGSVP SGLHFMNFAT PMALLPSQQL 300 GPQMGSGAGS SSGSAHRT*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47620.1	7e-54	TCP family protein