PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AUR62007888-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 233aa MW: 26701 Da PI: 7.8519 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 99.9 | 9.6e-32 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s AUR62007888-RA 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59 79***********************************************96 PP | |||||||
2 | K-box | 81.8 | 1.6e-27 | 82 | 160 | 9 | 87 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekel 87 + ++++e+++qe+ kLk++++ Lqr+qR+llGedL +Ls keL+qLe+qL+ksl++iRs K+e+lle+ + l+ k +e AUR62007888-RA 82 QPSKENENSYQEYLKLKAKVDVLQRNQRNLLGEDLAELSTKELEQLEHQLDKSLRQIRSIKEEMLLESNRALKAKLEES 160 567889*****************************************************************99997664 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence |
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSS 60 SSMAKTLERY QRCSYGSLET GQPSKENENS YQEYLKLKAK VDVLQRNQRN LLGEDLAELS 120 TKELEQLEHQ LDKSLRQIRS IKEEMLLESN RALKAKLEES CATLRQQWDV EAAQNNPTPY 180 VRQSNEDFFE PLPCNNNLPP NGYNVVTQDH LNNATTSTHN DNNNGFTPAW LL* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02310.1 | 1e-84 | MIKC_MADS family protein |