PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62007294-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

bHLH

Protein Properties

Length: 655aa MW: 71402.8 Da PI: 5.8227

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62007294-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.2	1.3e-12	466	511	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr ++P+ K++Ka+ L A+ YI++L AUR62007294-RA 466 NHVEAERQRREKLNQRFYALRAVVPNV-----SKMDKASLLGDAISYINEL 511 799*********************6.....5*************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 655 aa Download sequence
MMNLWSSDDI NGSSSSSLLM MDSYNPSIST TTASAAAHDT LHSRLQALID VPATPRGESW 60 TYAIFWQYSI DYSGQSLLGW GDGYYKGEDK QTRQEKAATN RISQDLAEQE HRKKVLRELN 120 SLISGVSPPE DSAVEEEVTD TEWFFLISMT HTFASGEDLP GQAHLSSSPI WAAGPERLSS 180 SPCDRAKQGS CFGLQTMVSI PVLNGVVELG STEVIFQSPD LMNKVRVLFC FGPAPGPNDP 240 GCSWPVPGST PAPSSDSDPT AMWINDPNPP EVKEARKTPT PPPPPPTIQQ QSQPSQSKVI 300 NLDSPIKSNV SEAQKPGFFT RELNFSEYAG FNGSGSKSNG SLKPESGEIL SFGGGDVKKP 360 VNNGNSNSIF GANSQFLMDE NSNKKKRCSP NSRGSNDEGM LSFTSGVILA SSGVGKSSNN 420 GGPDSEHSDL EASVREVDSG RVAPEPEKRP RKRGRKPANG REEPLNHVEA ERQRREKLNQ 480 RFYALRAVVP NVSKMDKASL LGDAISYINE LKSKLTVFES EKEGLVAQVE ELKKELLASR 540 GGVGSLNHHQ QQPPPHFDND IKVNGIEQQH LVDLEIDVKI VGWEAMIRVN CNKKNHPAAR 600 LMAALKELDL DVTHASVSVV NDLMIQQATA KMGNRYYSQE QLRMVLTSKV SDPR*

Sequence ? help Back to Top

Protein Sequence Length: 655 aa Download sequence

MMNLWSSDDI NGSSSSSLLM MDSYNPSIST TTASAAAHDT LHSRLQALID VPATPRGESW  60
TYAIFWQYSI DYSGQSLLGW GDGYYKGEDK QTRQEKAATN RISQDLAEQE HRKKVLRELN  120
SLISGVSPPE DSAVEEEVTD TEWFFLISMT HTFASGEDLP GQAHLSSSPI WAAGPERLSS  180
SPCDRAKQGS CFGLQTMVSI PVLNGVVELG STEVIFQSPD LMNKVRVLFC FGPAPGPNDP  240
GCSWPVPGST PAPSSDSDPT AMWINDPNPP EVKEARKTPT PPPPPPTIQQ QSQPSQSKVI  300
NLDSPIKSNV SEAQKPGFFT RELNFSEYAG FNGSGSKSNG SLKPESGEIL SFGGGDVKKP  360
VNNGNSNSIF GANSQFLMDE NSNKKKRCSP NSRGSNDEGM LSFTSGVILA SSGVGKSSNN  420
GGPDSEHSDL EASVREVDSG RVAPEPEKRP RKRGRKPANG REEPLNHVEA ERQRREKLNQ  480
RFYALRAVVP NVSKMDKASL LGDAISYINE LKSKLTVFES EKEGLVAQVE ELKKELLASR  540
GGVGSLNHHQ QQPPPHFDND IKVNGIEQQH LVDLEIDVKI VGWEAMIRVN CNKKNHPAAR  600
LMAALKELDL DVTHASVSVV NDLMIQQATA KMGNRYYSQE QLRMVLTSKV SDPR*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	448	456	KRPRKRGRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32640.1	1e-158	bHLH family protein