PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62005877-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

bHLH

Protein Properties

Length: 322aa MW: 35335.7 Da PI: 4.605

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62005877-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.1	7.8e-09	144	190	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h +Er+RR+ + + f L ++P + kK++K ++L +A++++k+Lq AUR62005877-RA 144 DHILAERKRRELLSQLFISLSAIVPGL-----KKVDKTSVLGEAIKHMKELQ 190 6899*********************.....9****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 322 aa Download sequence
MSSIMTMDAW LAELEMEMDT IPSLINHPSH QSGTMEAAFD EQLVATLADD FPYNLYDTSE 60 ATSPQGDFEC NNVIEQFIST PPISETSENN TDNNNNNDKN DSDNIVSSDV QESQPSKTKE 120 ETKKKQGVSR AGAKRKRQPS QVQDHILAER KRRELLSQLF ISLSAIVPGL KKVDKTSVLG 180 EAIKHMKELQ EKVKVLESVI AKRTMESVVA VVKKSKLIID NGSSDDNVSS STVDDHCGSG 240 SNDDGDSSGD SLPEVEVKIL GKSLLLRVYC GQQKDILVKL FAEIDKHHLS ITNFSVIPFE 300 NLAQDITIVA QVMIPQLPST S*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	123	137	KKKQGVSRAGAKRKR
2	134	148	KKKQGVSRAGAKRKR
3	134	175	KRKRQPSQVQDHILAERKRRELLSQLFISLSAIVPGLKKVDK
4	135	149	KKKQGVSRAGAKRKR
5	149	154	ERKRRE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	1e-38	bHLH family protein