PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62005638-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

CAMTA

Protein Properties

Length: 971aa MW: 108220 Da PI: 5.3564

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62005638-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	176.7	3e-55	13	126	3	116
CG-1 3 kekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrr 97 ++rwlk+ e++ iL+n+e++++t+e++++p+sgsl+L+n++++r+frkDG++w+kkkdg+tv E+he+LKvg+ e+l+cyYah+e+np+fqrr AUR62005638-RA 13 AAQTRWLKPAEVLFILQNHENYKITEEAPQKPSSGSLFLFNKRVLRFFRKDGHNWRKKKDGRTVGEAHERLKVGNSEALNCYYAHGEDNPKFQRR 107 4499***************************************************************************************** PP CG-1 98 cywlLeeelekivlvhyle 116 +yw+L++e+e+ivlvhy+e AUR62005638-RA 108 SYWMLDREHEHIVLVHYRE 126 ***************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 971 aa Download sequence
MQSGFDIKEL LQAAQTRWLK PAEVLFILQN HENYKITEEA PQKPSSGSLF LFNKRVLRFF 60 RKDGHNWRKK KDGRTVGEAH ERLKVGNSEA LNCYYAHGED NPKFQRRSYW MLDREHEHIV 120 LVHYREITEG KLSSGSIADL SPGTSSTYSQ SPSAYTMQNP GSSCLSDFHG SYQSHASPGS 180 IEVSSDAAVR KGIDCLNGSN ITEDMSMLPE NEVSQALRRL EVQLSLDDDI LKEYTPVDDQ 240 GGDADIYKAL DDQYDSKYAG VSSNSNGLSQ YDSGGNEVHH HVTPGMAQSI ENNDSLYWND 300 VFDTSKNSLN QKAEGEKSYI VIGNGNEPSS SARPNERESH QPQDYEAYIA QKWTEASKDT 360 DILAYSSSIY SSSPKFSTML LDPNLGLSLD SNVSLTIAKE QRFTIREISP EWGFTDDSTK 420 VIIIGSFLCD PSESEWLCMF GDVEVPLQIV QNGVLSCQAP PHSSGKVTLC ITSGNRESCS 480 EIREFEYRDK LTTCVHCNKH EGETTRSTDE MLLLVRLVQM IFSNPPAQHG ENNELGFDKQ 540 KIDGDMWNQI IEGLLVDGAS SSDTLDWVLQ QLLKDKLQQW LSSRSMEGRE RDDCFLSRKE 600 QGVIHMIAGL GYEWALNPVL GCGVGINFRD INGWTALHWA ARFGREKMVA ALIALGASAV 660 ALTDPSTHDP TGRNAAYIAE ASGHKGLAGY LSELALTSHL SSLNLEESEL SKGSANVEAE 720 LTINNLSEEN INSTDQDQLS LKHTLAAVRN AAQAAARIQA AFRAHSFKKR QHRPSSEVAS 780 DLDEYGFTIN DIQGLSKLVF HNLHDHQKAA LSIQKNYRGW KGRKDFLTLR QKVVKIQAHV 840 RGYQVRKKYK VICWAVGILD KVILRWRRKG VGLRGFRPES DCVDEDEDDD DIIKVFRKEK 900 VNVAIDEAVT RVLSMVESPE ARQQYLRMLG RSQEAMAEVQ LLTSSGASGS QDCVSSMDND 960 DILTFLESSG *

Sequence ? help Back to Top

Protein Sequence Length: 971 aa Download sequence

MQSGFDIKEL LQAAQTRWLK PAEVLFILQN HENYKITEEA PQKPSSGSLF LFNKRVLRFF  60
RKDGHNWRKK KDGRTVGEAH ERLKVGNSEA LNCYYAHGED NPKFQRRSYW MLDREHEHIV  120
LVHYREITEG KLSSGSIADL SPGTSSTYSQ SPSAYTMQNP GSSCLSDFHG SYQSHASPGS  180
IEVSSDAAVR KGIDCLNGSN ITEDMSMLPE NEVSQALRRL EVQLSLDDDI LKEYTPVDDQ  240
GGDADIYKAL DDQYDSKYAG VSSNSNGLSQ YDSGGNEVHH HVTPGMAQSI ENNDSLYWND  300
VFDTSKNSLN QKAEGEKSYI VIGNGNEPSS SARPNERESH QPQDYEAYIA QKWTEASKDT  360
DILAYSSSIY SSSPKFSTML LDPNLGLSLD SNVSLTIAKE QRFTIREISP EWGFTDDSTK  420
VIIIGSFLCD PSESEWLCMF GDVEVPLQIV QNGVLSCQAP PHSSGKVTLC ITSGNRESCS  480
EIREFEYRDK LTTCVHCNKH EGETTRSTDE MLLLVRLVQM IFSNPPAQHG ENNELGFDKQ  540
KIDGDMWNQI IEGLLVDGAS SSDTLDWVLQ QLLKDKLQQW LSSRSMEGRE RDDCFLSRKE  600
QGVIHMIAGL GYEWALNPVL GCGVGINFRD INGWTALHWA ARFGREKMVA ALIALGASAV  660
ALTDPSTHDP TGRNAAYIAE ASGHKGLAGY LSELALTSHL SSLNLEESEL SKGSANVEAE  720
LTINNLSEEN INSTDQDQLS LKHTLAAVRN AAQAAARIQA AFRAHSFKKR QHRPSSEVAS  780
DLDEYGFTIN DIQGLSKLVF HNLHDHQKAA LSIQKNYRGW KGRKDFLTLR QKVVKIQAHV  840
RGYQVRKKYK VICWAVGILD KVILRWRRKG VGLRGFRPES DCVDEDEDDD DIIKVFRKEK  900
VNVAIDEAVT RVLSMVESPE ARQQYLRMLG RSQEAMAEVQ LLTSSGASGS QDCVSSMDND  960
DILTFLESSG *

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67310.1	0.0	CAMTA family protein