PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62004505-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

bHLH

Protein Properties

Length: 572aa MW: 63622.2 Da PI: 6.8461

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62004505-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.9	7.5e-13	401	447	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N++f Lr ++P+ + K++Ka+ L A+ YI +Lq AUR62004505-RA 401 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAISYITELQ 447 799*********************66......***************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 572 aa Download sequence
MGGGVVWNEE DKAMIASILG TRAFDYLISS PFTAETSLVS LENNENIQNK LSDLVERPNA 60 SNFSWNYGFF WQISRAKSGE VVLSWGDGYC REPREGEESE ATRLLNFRLE DESHQKIRKR 120 VLQKLNTLFG GSDDDNLACR LDRVTDMEMF FLVSMYFSFP RGEGGPGSCF ASGKHVWESD 180 LLRAKSDYCV RSFLAKSAGI QTVILIPTES GVVELGSVRA IGENHNVLKA LKYAFSPPPA 240 PVNLNTTVRP PFREKLAVKR MEDRHWDGYA NGNKLSFTGQ SPRNNGIQSV QCTNWANIPG 300 VKHATATELY SPQNTRLQEY VNGIRSEYRL NQFHQQKPAQ MEIDFTGATS RPTVASQPGS 360 AESEHSDPEV SGRDDRSGPS DDRKPRKRGR KPANGREEPL NHVEAERQRR EKLNQRFYAL 420 RAVVPNISKM DKASLLGDAI SYITELQKKL KDMEAEREKH NSTSRETSGT EANSVAEVQG 480 QAPEVELQAL HDEVVIKVSC PLDSHPVARI IRAFKDSEIN VVDSKLAAGT DTVFHTFVIK 540 SQGSEPLTKE KVLAAFSHDS KSLQAPPSTG E*

Sequence ? help Back to Top

Protein Sequence Length: 572 aa Download sequence

MGGGVVWNEE DKAMIASILG TRAFDYLISS PFTAETSLVS LENNENIQNK LSDLVERPNA  60
SNFSWNYGFF WQISRAKSGE VVLSWGDGYC REPREGEESE ATRLLNFRLE DESHQKIRKR  120
VLQKLNTLFG GSDDDNLACR LDRVTDMEMF FLVSMYFSFP RGEGGPGSCF ASGKHVWESD  180
LLRAKSDYCV RSFLAKSAGI QTVILIPTES GVVELGSVRA IGENHNVLKA LKYAFSPPPA  240
PVNLNTTVRP PFREKLAVKR MEDRHWDGYA NGNKLSFTGQ SPRNNGIQSV QCTNWANIPG  300
VKHATATELY SPQNTRLQEY VNGIRSEYRL NQFHQQKPAQ MEIDFTGATS RPTVASQPGS  360
AESEHSDPEV SGRDDRSGPS DDRKPRKRGR KPANGREEPL NHVEAERQRR EKLNQRFYAL  420
RAVVPNISKM DKASLLGDAI SYITELQKKL KDMEAEREKH NSTSRETSGT EANSVAEVQG  480
QAPEVELQAL HDEVVIKVSC PLDSHPVARI IRAFKDSEIN VVDSKLAAGT DTVFHTFVIK  540
SQGSEPLTKE KVLAAFSHDS KSLQAPPSTG E*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	383	391	RKPRKRGRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01260.1	1e-179	bHLH family protein