PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62004248-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

bHLH

Protein Properties

Length: 279aa MW: 31299.3 Da PI: 5.7875

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62004248-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.9	9.7e-10	76	122	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h +Er+RR+ + + f L +++P + kK++K++iL A++++k Lq AUR62004248-RA 76 DHILAERKRREVLSHMFISLSSMIPGL-----KKMDKITILGDAIKHMKVLQ 122 6899*********************.....9**************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence
MEEVTPFDEQ LADVLFSDDF SYPLSVENNT FDSQWDIGDK VVQEPRRSKK CKVGKQDESG 60 SEGRPRRKRQ ATQVQDHILA ERKRREVLSH MFISLSSMIP GLKKMDKITI LGDAIKHMKV 120 LQEKVKQLEV AAAQLNTSKS TVVVKKYQLS MNDDNDNDND GSSSVLVDVM SASGGNNDDG 180 SNNNNTNNVI KNSSSLPEIQ IKILDDTLLL KVFCENRKGI LSDLSEVVER HDLSITNYYV 240 IPFQRFTLDI TIVAQIEEGF NNNVKGFVRT LQSKLRSG*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	64	68	RPRRK
2	66	85	RRKRQATQVQDHILAERKRR
3	66	107	RRKRQATQVQDHILAERKRREVLSHMFISLSSMIPGLKKMDK
4	67	86	RRKRQATQVQDHILAERKRR
5	81	86	ERKRRE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	5e-35	bHLH family protein