PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62003472-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

C3H

Protein Properties

Length: 717aa MW: 79236.1 Da PI: 6.6431

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62003472-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.9	1.3e-06	114	138	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 k+++C ff+r G+C drC+++Hgp AUR62003472-RA 114 KQVPCIFFQR-GQCLKADRCPYMHGP 138 789*****.***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 717 aa Download sequence
MATTVTKEAL QPQQGPPSSS APEDESLKRN TDCVYFLASP LTCKKGVDCE YRHSDYARMN 60 PTDCWYWMNG NCLNPKCSFR HPPLDGLVGN QVDGPSALVP PGLPMLSAPQ NPVKQVPCIF 120 FQRGQCLKAD RCPYMHGPSP PNTKIQQAPS SSTPTPGAHA FKKAFGSLEK CTQPQMNFQA 180 NKPKVVETPH QANAFPKNQS IRPTNGATVG KGYLPPSGVT AAGSSKYGEI KPSSVDNGNS 240 RSRTGRAHHG GSYDDHYFQN CRDADDSLRE SSPGFDVLVD NKVNEDEFYH NEDQYGKMRG 300 RDGRNLNEFD IGRQDDYGSV ADVEPEIYHN RCGYDSFDRM PEKYARDHRR VSSERSLGEP 360 AHMDRRGPPY KSESLDVNQN SDLRHRLSKH RRVNGLKSVV NSDYSHDDRA EDRGYRSTRR 420 DSRRSPIHES SRGHRLQGRI KLPRKSSPVS VNDIYSEREN ERGRSFGRLS PSRQQVSGQP 480 SRLRDRLSGM KQDESREGRM IKGPMMRKDT VPSDDVNFAG PKSLSELKGT KNTDSKSHQL 540 KSQEPVSGGK LRDTVLASSI GTEGNIAFAG PKPLSEILKR KRTASTGGTS SDDKEEIKDN 600 ENDVNLTSSP SNCAADTRKQ VASDSADEQA EASKVENKIL AVEADEEEGE ISNKKIKSNG 660 DSESPSLDDN KQPEAEEALV VADGYHLNDG ETGDLEEEFM DEDDGDDFAK KLGVSF*

Sequence ? help Back to Top

Protein Sequence Length: 717 aa Download sequence

MATTVTKEAL QPQQGPPSSS APEDESLKRN TDCVYFLASP LTCKKGVDCE YRHSDYARMN  60
PTDCWYWMNG NCLNPKCSFR HPPLDGLVGN QVDGPSALVP PGLPMLSAPQ NPVKQVPCIF  120
FQRGQCLKAD RCPYMHGPSP PNTKIQQAPS SSTPTPGAHA FKKAFGSLEK CTQPQMNFQA  180
NKPKVVETPH QANAFPKNQS IRPTNGATVG KGYLPPSGVT AAGSSKYGEI KPSSVDNGNS  240
RSRTGRAHHG GSYDDHYFQN CRDADDSLRE SSPGFDVLVD NKVNEDEFYH NEDQYGKMRG  300
RDGRNLNEFD IGRQDDYGSV ADVEPEIYHN RCGYDSFDRM PEKYARDHRR VSSERSLGEP  360
AHMDRRGPPY KSESLDVNQN SDLRHRLSKH RRVNGLKSVV NSDYSHDDRA EDRGYRSTRR  420
DSRRSPIHES SRGHRLQGRI KLPRKSSPVS VNDIYSEREN ERGRSFGRLS PSRQQVSGQP  480
SRLRDRLSGM KQDESREGRM IKGPMMRKDT VPSDDVNFAG PKSLSELKGT KNTDSKSHQL  540
KSQEPVSGGK LRDTVLASSI GTEGNIAFAG PKPLSEILKR KRTASTGGTS SDDKEEIKDN  600
ENDVNLTSSP SNCAADTRKQ VASDSADEQA EASKVENKIL AVEADEEEGE ISNKKIKSNG  660
DSESPSLDDN KQPEAEEALV VADGYHLNDG ETGDLEEEFM DEDDGDDFAK KLGVSF*