PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62003039-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

bHLH

Protein Properties

Length: 568aa MW: 61543.2 Da PI: 4.9832

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62003039-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.2	7.1e-09	381	429	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + sk Ka +L + ++Y++sLq AUR62003039-RA 381 NSHSLAERVRREKISERMKFLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 429 58***********************9....556***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 568 aa Download sequence
MAEEFEKIPD SQESLEIEQI EDSLMNLEIQ TSNQFEVGME MNDKDKSEVE KRNEEPLTYH 60 PPGISADWRY DIPNYANSSM GLVSSGNSMA VCGDAVGPSC SSGSMVDSFS PTVWEHSVNT 120 APLGFSEMNV HNGAGVSDPL SMLKSGLFLP SMSGMLPHSL SQFPADSAFI ERAARFSSFS 180 GGHFGDMLNP LGIHQSDSPY FRGGAMMQGP QEVLPGNAYK TLAGRHPQNP EASFAETSKD 240 VSVTPEHGAV EGNSPKNETM VERSREEAKQ PVSMSGNDSD EPEFSGGAAQ EQGVPSTAKT 300 AGGKKRKRGN QDAEAERSNG TQQHSDETRK NISEIQQKGE QNLTPTGNKS NGKHVKQSSQ 360 ASDSAKEEYI HVRARRGQAT NSHSLAERVR REKISERMKF LQDLVPGCSK VTGKAVMLDE 420 IINYVQSLQR QVEFLSMKLA TVNPRLDFNI ERLLAKDQMF SARAGPSSGL PFSPEIQMPY 480 PSLNQTQPSI MPPSLPGSGT SSDILRRVIN SQLSNMGGGY KESALQLPNA WDGELHNVVQ 540 MGFNASSPLD NQETSGSTPT GQMKAES*

Sequence ? help Back to Top

Protein Sequence Length: 568 aa Download sequence

MAEEFEKIPD SQESLEIEQI EDSLMNLEIQ TSNQFEVGME MNDKDKSEVE KRNEEPLTYH  60
PPGISADWRY DIPNYANSSM GLVSSGNSMA VCGDAVGPSC SSGSMVDSFS PTVWEHSVNT  120
APLGFSEMNV HNGAGVSDPL SMLKSGLFLP SMSGMLPHSL SQFPADSAFI ERAARFSSFS  180
GGHFGDMLNP LGIHQSDSPY FRGGAMMQGP QEVLPGNAYK TLAGRHPQNP EASFAETSKD  240
VSVTPEHGAV EGNSPKNETM VERSREEAKQ PVSMSGNDSD EPEFSGGAAQ EQGVPSTAKT  300
AGGKKRKRGN QDAEAERSNG TQQHSDETRK NISEIQQKGE QNLTPTGNKS NGKHVKQSSQ  360
ASDSAKEEYI HVRARRGQAT NSHSLAERVR REKISERMKF LQDLVPGCSK VTGKAVMLDE  420
IINYVQSLQR QVEFLSMKLA TVNPRLDFNI ERLLAKDQMF SARAGPSSGL PFSPEIQMPY  480
PSLNQTQPSI MPPSLPGSGT SSDILRRVIN SQLSNMGGGY KESALQLPNA WDGELHNVVQ  540
MGFNASSPLD NQETSGSTPT GQMKAES*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	303	309	GKKRKRG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.3	1e-111	bHLH family protein