PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62002694-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

TCP

Protein Properties

Length: 443aa MW: 46588.7 Da PI: 8.0371

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62002694-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	103.4	3.8e-32	106	251	2	104
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............................... 65 g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWL+++a ai el+++ AUR62002694-RA 106 SGGKDRHSKVLTAKGPRDRRVRLSVTTAIQFYDLQDRLGYDQPSKAVEWLIKAAADAINELPSLntssfppetprqlsderkptlngvdsadvel 200 689*************************************************************8777776666666666666666666666666 PP TCP 66 ...........ssssasec.eaesssssasnsssgkaaksaakskksqksa 104 + s++s c +++s+ s++s s + + +++++++ +++ AUR62002694-RA 201 dgdpgyghnqqQMSTKSGCcSNNSETSKGSGLSLCRVSVASHQHNQHHQNV 251 555555555442222223323333333333111112222222222222222 PP

Sequence ? help Back to Top
Protein Sequence Length: 443 aa Download sequence
MEVDEIQSSQ QACKYSRVNS NGRIDTSKIG GGGSGGHDSA GRGDEVEETD LRRAIVPTTT 60 TSTNPAAVTG NGSSGGVGGD MQVGSSNRFG RQWQPSSRII RVSRASGGKD RHSKVLTAKG 120 PRDRRVRLSV TTAIQFYDLQ DRLGYDQPSK AVEWLIKAAA DAINELPSLN TSSFPPETPR 180 QLSDERKPTL NGVDSADVEL DGDPGYGHNQ QQMSTKSGCC SNNSETSKGS GLSLCRVSVA 240 SHQHNQHHQN VSSMPQTSSF TQLLTAGMSN LNESNNGAAA SSSPSPHHRV DSEVDLFHKH 300 SRGGGSNNNQ WLSSAAAAST TPMADYFGTG LMGLSSSRAD QQHLIQVANA AASPGASGGG 360 NDYNLNFSIS SSSTPTPSLA AGFNNRGTLQ SNSPSLLSYL QRFSTTDGSS LPFFLSNATP 420 PGLQLYYSDG NRLSDQKGKG KN*

Sequence ? help Back to Top

Protein Sequence Length: 443 aa Download sequence

MEVDEIQSSQ QACKYSRVNS NGRIDTSKIG GGGSGGHDSA GRGDEVEETD LRRAIVPTTT  60
TSTNPAAVTG NGSSGGVGGD MQVGSSNRFG RQWQPSSRII RVSRASGGKD RHSKVLTAKG  120
PRDRRVRLSV TTAIQFYDLQ DRLGYDQPSK AVEWLIKAAA DAINELPSLN TSSFPPETPR  180
QLSDERKPTL NGVDSADVEL DGDPGYGHNQ QQMSTKSGCC SNNSETSKGS GLSLCRVSVA  240
SHQHNQHHQN VSSMPQTSSF TQLLTAGMSN LNESNNGAAA SSSPSPHHRV DSEVDLFHKH  300
SRGGGSNNNQ WLSSAAAAST TPMADYFGTG LMGLSSSRAD QQHLIQVANA AASPGASGGG  360
NDYNLNFSIS SSSTPTPSLA AGFNNRGTLQ SNSPSLLSYL QRFSTTDGSS LPFFLSNATP  420
PGLQLYYSDG NRLSDQKGKG KN*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18390.1	2e-47	TCP family protein