PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62001769-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

MYB_related

Protein Properties

Length: 661aa MW: 72932.8 Da PI: 7.3578

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62001769-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.2	3.2e-07	560	609	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 r +++ E e lv+av++lG+g+W+ + + k+Rt ++k++w ++ AUR62001769-RA 560 RRPFSVTEVESLVQAVEKLGTGRWRDVKLRAFdnvKHRTYVDLKDKWKTL 609 6789999*****************9988889************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 661 aa Download sequence
MLQKRLDYGF SGYQVPFIPR AARSSRKRRP IREKAVAVDN QLCAFDLLAT VAGKLLEGES 60 SQNLPIEKDQ LGDVQDVVMQ DQDEGTLCLK DELCDKGDNE VASLNLELGL QVQDQGCNVK 120 EISVPQNDAS PAPASVITSS HCPEKDEYLV KMDTNDDKSD FCSLSRSTEG FAPGHTDSCV 180 PNVNESVEDH DGKGEVLSGN GLDMHCSEDP EFFDGNSPAV ASSDCSIKLS LGVDHYPCGS 240 LSPRRDNNVK VVTRDDDENS SECTQPSTMK PARLPARIGD RRIRKLLASK HWRLASKVKD 300 GDHSDTGLRC IYRSRRTGYK RPRSQRIYPF KKRKFYHYSS LLNSDVDDGC KGNGSSSCDA 360 GQSTSFASRE SHVKLRIKSF RVPELFIEMP ETATVGSLKR TVMEAVTALL GGGLRVGVRL 420 QGKKIRDDNR TLVQSGICHD DKVESLGFTL EPNPSHIGTP VSSEDNSLLL STDVPQPVSR 480 CPTLSVNNQG ASHDHPVRNL GNFVESDHDS APSPAEITAE KGSVDSRALV ALPEGSPQAL 540 AVVPSHQKSK RSEMAQRRIR RPFSVTEVES LVQAVEKLGT GRWRDVKLRA FDNVKHRTYV 600 DLKDKWKTLV HTARISPQQR RGEPVPQELL DRVLTAHSYW SQQQAKQQLK QQPSDACLLL 660 *

Sequence ? help Back to Top

Protein Sequence Length: 661 aa Download sequence

MLQKRLDYGF SGYQVPFIPR AARSSRKRRP IREKAVAVDN QLCAFDLLAT VAGKLLEGES  60
SQNLPIEKDQ LGDVQDVVMQ DQDEGTLCLK DELCDKGDNE VASLNLELGL QVQDQGCNVK  120
EISVPQNDAS PAPASVITSS HCPEKDEYLV KMDTNDDKSD FCSLSRSTEG FAPGHTDSCV  180
PNVNESVEDH DGKGEVLSGN GLDMHCSEDP EFFDGNSPAV ASSDCSIKLS LGVDHYPCGS  240
LSPRRDNNVK VVTRDDDENS SECTQPSTMK PARLPARIGD RRIRKLLASK HWRLASKVKD  300
GDHSDTGLRC IYRSRRTGYK RPRSQRIYPF KKRKFYHYSS LLNSDVDDGC KGNGSSSCDA  360
GQSTSFASRE SHVKLRIKSF RVPELFIEMP ETATVGSLKR TVMEAVTALL GGGLRVGVRL  420
QGKKIRDDNR TLVQSGICHD DKVESLGFTL EPNPSHIGTP VSSEDNSLLL STDVPQPVSR  480
CPTLSVNNQG ASHDHPVRNL GNFVESDHDS APSPAEITAE KGSVDSRALV ALPEGSPQAL  540
AVVPSHQKSK RSEMAQRRIR RPFSVTEVES LVQAVEKLGT GRWRDVKLRA FDNVKHRTYV  600
DLKDKWKTLV HTARISPQQR RGEPVPQELL DRVLTAHSYW SQQQAKQQLK QQPSDACLLL  660
*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	280	286	DRRIRKL
2	325	334	QRIYPFKKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07540.1	1e-115	MYB_related family protein