PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AUR62000047-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
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Family | C3H | ||||||||
Protein Properties | Length: 300aa MW: 31466.5 Da PI: 9.8226 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24.3 | 5.4e-08 | 102 | 127 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt++C+ f CkyGd+C+FaHg+ AUR62000047-RA 102 KTKICNKFNSPEGCKYGDKCHFAHGE 127 899999999999************96 PP | |||||||
2 | zf-CCCH | 34.8 | 2.8e-11 | 266 | 290 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC +f + G C +GdrC+FaHg AUR62000047-RA 266 FKTRLCENFTK-GSCTFGDRCHFAHG 290 79*********.*************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 300 aa Download sequence |
MDFGGPRKRG RPEASLNGNG GFKKSRPESE SFQSGVGSKS KPCTKFFSTS GCPFGEGCHF 60 LHHVPGGFKA VSQMLNLGGA PVPPPRNVAP SYSDGPATPS GKTKICNKFN SPEGCKYGDK 120 CHFAHGERQL GRPSIPSYED PRGMGYMSGR MGGMMEPPPP GLGAAANFGE SSTAKLSIDA 180 ALAGAVIGKS GINSKQICRV TGVKLSIRDH ETDSNKRNIQ LEGTFDQIKQ ASSMVEELIR 240 NVKAASGGPP VRQATGHGAP GGGSNFKTRL CENFTKGSCT FGDRCHFAHG ADEMRKSAI* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12130.1 | 4e-56 | C3H family protein |