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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023551518.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
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Family | LBD | ||||||||
Protein Properties | Length: 170aa MW: 19013.8 Da PI: 7.77 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 137.5 | 4.8e-43 | 6 | 105 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+C+++Cvlapyfp ++p kfa+vh++FGa nv+k+l++lpe++r da+sslvyeA+ar+rdP+yG++g i++lq+q+++l+a+la XP_023551518.1 6 PCAACKILRRRCVDKCVLAPYFPPTEPLKFAAVHRIFGAGNVIKFLQELPENQRADATSSLVYEANARIRDPIYGCTGSIFQLQNQVSELQAQLA 100 7********************************************************************************************** PP DUF260 96 llkee 100 ++k+e XP_023551518.1 101 VAKAE 105 99876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 170 aa Download sequence |
MVVLSPCAAC KILRRRCVDK CVLAPYFPPT EPLKFAAVHR IFGAGNVIKF LQELPENQRA 60 DATSSLVYEA NARIRDPIYG CTGSIFQLQN QVSELQAQLA VAKAEVHKMQ AQHANLLALM 120 CTETSQVRVE GREVPVLCQD HFPFSDLNPI PHYYKSSNIS WDSSWTSSSF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 2e-62 | LBD family protein |