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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023549946.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
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Family | LBD | ||||||||
Protein Properties | Length: 294aa MW: 33315.4 Da PI: 5.1327 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 128.9 | 2.3e-40 | 10 | 109 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 aCaaCk++rr+C+kdC+lapyfpa+qpk f+n+h+lFG+ n++k+l++++ ++++++m+s++ye+++rar Pv+G++gv+++l+ q++q+++el XP_023549946.1 10 ACAACKYQRRRCSKDCALAPYFPADQPKMFQNAHRLFGVCNIMKILRQVHASQKDETMTSIIYESNMRARFPVHGCCGVLWQLHYQIQQVAEELR 104 7*********************************************************************************************9 PP DUF260 96 llkee 100 +++++ XP_023549946.1 105 QVRTR 109 98865 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 294 aa Download sequence |
MTIKGGTSQA CAACKYQRRR CSKDCALAPY FPADQPKMFQ NAHRLFGVCN IMKILRQVHA 60 SQKDETMTSI IYESNMRARF PVHGCCGVLW QLHYQIQQVA EELRQVRTRL AMFKDQFIPG 120 MAEGNFGSND MVYPIYTQQQ QQQQLQQYNS GLLVNQATDG NDLLFGNVNS GGIYLDNDDN 180 NGLMLKDLRI QQHYNDNYGI NISNVDSMLM QSNLIPTTVQ GYPLQQEMEI SHDYDEIPFD 240 TIADDRQSYI ESKEACDSSA ESTFKDVSEA SAEYVSRSDL KNAAACFSLT SHIK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47870.1 | 8e-47 | LBD family protein |