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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023548284.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
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Family | LBD | ||||||||
Protein Properties | Length: 234aa MW: 23999.1 Da PI: 8.0829 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 126.8 | 1e-39 | 28 | 128 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrrkC ++C++apyf +eq + +fa+vhk+FGasnv+kll ++p ++r da+ +++ye++ar+rdPvyG+v++i++lqqq+ +l+ael XP_023548284.1 28 PCGACKFLRRKCIPGCIFAPYFDSEQgAGHFAAVHKVFGASNVSKLLLHIPVHKRLDAVVTICYESQARLRDPVYGCVAHIFALQQQVVSLQAEL 122 7***********************9988******************************************************************* PP DUF260 95 allkee 100 ++l+++ XP_023548284.1 123 SYLQAH 128 *99986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence |
MSANPSTSGG GGGSGTAGGG GGGGGGGPCG ACKFLRRKCI PGCIFAPYFD SEQGAGHFAA 60 VHKVFGASNV SKLLLHIPVH KRLDAVVTIC YESQARLRDP VYGCVAHIFA LQQQVVSLQA 120 ELSYLQAHLA TLELPSPPPP PNFAAQPPVS ISDLPSASSL PVTYDLSSLF DPMAQPAWAM 180 QQQRLDHRQF SSGGAGGSST TAGEGDLQAL ARSLLHRHGG PPCSNASSPP SLSK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45420.1 | 1e-70 | LBD family protein |