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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023548244.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
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Family | LBD | ||||||||
Protein Properties | Length: 219aa MW: 23887.7 Da PI: 4.8188 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 113 | 2e-35 | 23 | 123 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrrkC+++Cv+ap f ++ +++fa+vhk+FGasnv+kll +lp + r++a+ +++yeA r+rdP +G+v +i++lqq++++l++e+ XP_023548244.1 23 SCGACKFLRRKCSDQCVFAPLFSYDEaTSHFAAVHKVFGASNVSKLLLHLPMHVRSQAAITVTYEALERMRDPANGCVFHIFALQQEVASLQEEI 117 6**********************98868******************************************************************* PP DUF260 95 allkee 100 + l+++ XP_023548244.1 118 QILGTQ 123 998877 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence |
MTVLNSYDSS SSSSSSSSSS SSSCGACKFL RRKCSDQCVF APLFSYDEAT SHFAAVHKVF 60 GASNVSKLLL HLPMHVRSQA AITVTYEALE RMRDPANGCV FHIFALQQEV ASLQEEIQIL 120 GTQIANFLTT GAAISAVENP FIEMNDYDFG MNSNHSQNQL LPYQTSDGVQ KDDQMISPLL 180 CLGEKDGGFG FCHSNHVVER SGFDVSVEEN FGGYPWILG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06080.1 | 4e-54 | LBD family protein |