PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023546645.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family SBP
Protein Properties Length: 451aa    MW: 50760.9 Da    PI: 8.4719
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023546645.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP126.88.5e-40150226278
                     -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
             SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                     CqvegC+ d+s++k+y+r+h+vCe hsk+p+v++ g e+rfCqqCsrfh++sefD +krsCrrrL++hn+rrrk+q+
  XP_023546645.1 150 CQVEGCNIDISNIKDYYRKHRVCESHSKSPKVIIGGFERRFCQQCSRFHSISEFDGKKRSCRRRLSNHNARRRKPQS 226
                     **************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    
MEWNARPPLQ WDWDNLTVLN PRYSEHAGDD RTTGGPFFKL GQTSPKISKS VSTNSSSFEK  60
SRTTKFTLEG FEPTLEDSCN KKEFVEAEVV STYGTPETST CSCEPMLSLK LGKQAYFENA  120
SAVNLTKPSA LMVESRATRK RCQNTPSAHC QVEGCNIDIS NIKDYYRKHR VCESHSKSPK  180
VIIGGFERRF CQQCSRFHSI SEFDGKKRSC RRRLSNHNAR RRKPQSKVVS LNPARLSSWD  240
FENRQIDIFS DKLSLIYPTP NEKSAWESAF SSRHPQCGKY VSKPEPTYGS IGQLNVSGDE  300
MCYVHAMPYH DNTSKAVPFK GAATKILDPE GYVIPSNLNS AQDLQRALSL LSTDTKGPYE  360
ARLFAPDNPN RLVNPNYANQ PSISQSPMNL GIQTLPFASV DSQSWGNGHH HPIELQMQIH  420
HPNIEGGNNL FQDFQLFKTP CEIGMFSNQI S
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1206223KKRSCRRRLSNHNARRRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.14e-45SBP family protein