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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023546637.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
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Family | SBP | ||||||||
Protein Properties | Length: 452aa MW: 50590.9 Da PI: 8.725 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 126.8 | 8.5e-40 | 151 | 227 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 CqvegC+ d+s++k+y+r+h+vCe hsk+p+v++ g e+rfCqqCsrfh++sefD +krsCrrrL++hn+rrrk+q+ XP_023546637.1 151 CQVEGCNIDISNIKDYYRKHRVCESHSKSPKVIIGGFERRFCQQCSRFHSISEFDGKKRSCRRRLSNHNARRRKPQS 227 **************************************************************************986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 452 aa Download sequence |
MRRFPQPFVI DGVECKTPFT MGLGQLNSGD DRTTGGPFFK LGQTSPKISK SVSTNSSSFE 60 KSRTTKFTLE GFEPTLEDSC NKKEFVEAEV VSTYGTPETS TCSCEPMLSL KLGKQAYFEN 120 ASAVNLTKPS ALMVESRATR KRCQNTPSAH CQVEGCNIDI SNIKDYYRKH RVCESHSKSP 180 KVIIGGFERR FCQQCSRFHS ISEFDGKKRS CRRRLSNHNA RRRKPQSKVV SLNPARLSSW 240 DFENRQIDIF SDKLSLIYPT PNEKSAWESA FSSRHPQCGK YVSKPEPTYG SIGQLNVSGD 300 EMCYVHAMPY HDNTSKAVPF KGAATKILDP EGYVIPSNLN SAQDLQRALS LLSTDTKGPY 360 EARLFAPDNP NRLVNPNYAN QPSISQSPMN LGIQTLPFAS VDSQSWGNGH HHPIELQMQI 420 HHPNIEGGNN LFQDFQLFKT PCEIGMFSNQ IS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 207 | 224 | KKRSCRRRLSNHNARRRK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43270.1 | 7e-44 | SBP family protein |