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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023542969.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 339aa MW: 38292.2 Da PI: 7.1514 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 63.5 | 2.3e-20 | 9 | 53 | 1 | 45 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 kr +n+ rq tf+kR++gi+KKA+ELS+LCd+++ +++fs+tgk XP_023542969.1 9 KRLDNTNGRQATFAKRKHGIIKKANELSILCDIDIILLMFSPTGK 53 68899**************************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 339 aa Download sequence |
MGRVKLKIKR LDNTNGRQAT FAKRKHGIIK KANELSILCD IDIILLMFSP TGKPSLCSGK 60 RSIEEVIAKF AQQTPQERAK RKLESLEALR KTFKKLDHDV NIQDFLGTSS QTIEDLAGQA 120 KFLRTQLSEV HQRLSFWGNP EKINNVDHLA QMEDSLRESL NQVRAHKENL QKHPPVPLEF 180 ANQDGMHLPF DMSVEQQLQQ LQHYSWIPSD AQNIVLHDDP NFAPHRDVEC SASSSFASYP 240 GYFGTGRSPE ISNSGHENGV LPELTRTEPL RPQLGGQNSY MSYNVNFFND PRFQPAAEMK 300 LPVNPVDYRV NGNYDTAQLN WASSSGPCAV SLLDDHLFP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03060.2 | 1e-105 | M-type_MADS family protein |