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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023542245.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
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Family | LBD | ||||||||
Protein Properties | Length: 212aa MW: 23489.4 Da PI: 4.2616 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 113.6 | 1.3e-35 | 15 | 115 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrrkC+++Cv+ap f ++ +++fa+vhk+FGasnv+kll +lp + r++a+ +++yeA r+rdP yG+v++i++lqq++ +l++e+ XP_023542245.1 15 SCGACKFLRRKCSNHCVFAPFFTYDEaTSHFAAVHKVFGASNVSKLLLHLPMHIRSHAAITVAYEALERMRDPTYGCVAHIFALQQEIVSLQEEI 109 6*********************998868******************************************************************* PP DUF260 95 allkee 100 ++l+++ XP_023542245.1 110 DMLGSQ 115 999877 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence |
MTGLTSSSSS SSSSSCGACK FLRRKCSNHC VFAPFFTYDE ATSHFAAVHK VFGASNVSKL 60 LLHLPMHIRS HAAITVAYEA LERMRDPTYG CVAHIFALQQ EIVSLQEEID MLGSQIANFT 120 ADMDNVAVVE NPCIELQVSK QLNDLVMNTN DYQNELLSQL PTFDEVETND AQMISPLFCI 180 GEEEGFFGCN PNNAMENSAF DVSVDENFAY LW |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06080.1 | 6e-59 | LBD family protein |