![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_023539789.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 363aa MW: 40768.8 Da PI: 4.7053 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 36.2 | 8e-12 | 11 | 52 | 3 | 44 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 i ++ r+ +f kRr g++KK +EL +LC++ + +++++++ XP_023539789.1 11 IASDNARKASFKKRRLGLMKKVSELTTLCGVYAFAVVYGPDD 52 678889*********************************985 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 363 aa Download sequence |
MTRKKVKLVW IASDNARKAS FKKRRLGLMK KVSELTTLCG VYAFAVVYGP DDDNPVIWPS 60 LSAAQHLYRR FHSLPEVERQ KKMTNQETYL KERTAKAQDL LKKHMKKNQE LEIDLLMHQL 120 HQGRQIYQLS TEELLGLFWM VEEKMRECRK RIEYHQQVHR LHPPPGFVSS NTPLLPTGSN 180 EMDLVDNGRN LMDQWFIDMV MNSNDKIGGS SSSMAGELGF QSEGNVGGNS MMEVVDLGGR 240 TTITAEGDMD ENNLLCDWNF GGTGCGMSEI EKLVSNLGGV DDNASPMDLA NPQANYGIIG 300 DGGDGASVEA EMMLHGLFGS GTRSRSSNGT ENETLIEKVN EEEEEEEDED DLLNKEWPNN 360 FTP |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 3 | 25 | RKKVKLVWIASDNARKASFKKRR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G40210.1 | 5e-39 | M-type_MADS family protein |