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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023539009.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
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Family | SBP | ||||||||
Protein Properties | Length: 365aa MW: 40500.2 Da PI: 8.0079 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 130.6 | 5.6e-41 | 134 | 211 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC++ l +ak+yhrrh+vCe+hskap+v+v gleqrfCqqCsrfh +sefD++krsCrrrLa+hnerrrk+++ XP_023539009.1 134 RCQVEGCHVALVNAKDYHRRHRVCEMHSKAPKVVVVGLEQRFCQQCSRFHVISEFDDSKRSCRRRLAGHNERRRKSSQ 211 6**************************************************************************987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 365 aa Download sequence |
MPISSPTISN LSSSFPSFAA LLAVLEMEIC GNLIGQSNAG RDQTANPTTV WEHLNSSRFH 60 LDWATANSTH GDAHQHHQCL FPGDHHQGGH FHRDPHLMCL KLGKRHYFED ATAASVVGKR 120 GKPLYSTVPT SVPRCQVEGC HVALVNAKDY HRRHRVCEMH SKAPKVVVVG LEQRFCQQCS 180 RFHVISEFDD SKRSCRRRLA GHNERRRKSS QESVAARNWS GENKSRTGKI AYIPSPTGRA 240 LSLLSSKNES WATSSELSLR SSAALRELIA ENRAAILARQ LILERDWHSN HTRTADDFGG 300 GGVGLEQSWE KMHDDGNGGA HVTLDLMQAP RTAFGVLSVS GKSKEEDEEC GELWNSFQDH 360 DSNVV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G27370.3 | 1e-39 | SBP family protein |