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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023535944.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
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Family | LBD | ||||||||
Protein Properties | Length: 202aa MW: 22031.1 Da PI: 8.722 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 93.9 | 1.8e-29 | 2 | 102 | 1 | 96 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C+vlr++C++ Cvl+ + p++q++++ +++k+FG+s +l++++a+p+++r+++++sl++eA+ r+ +Pv+Gavg++++++++++ql XP_023535944.1 2 SCSGCRVLRKGCNEACVLRSSLhwirsPEAQANATLFLAKFFGRSDLLSFIAAVPHHQRPALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQL 96 6********************************************************************************************** PP DUF260 91 kaelal 96 +a+++l XP_023535944.1 97 AADTVL 102 *99876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence |
MSCSGCRVLR KGCNEACVLR SSLHWIRSPE AQANATLFLA KFFGRSDLLS FIAAVPHHQR 60 PALFQSLLFE ACGRTVNPVS GAVGLLSSGN WHVCQLAADT VLSGGVLRPI PGIELSGNPT 120 RNVDDSTLTF NTDVWTTTAQ NLQLYPSTPS DFRCLPDLAV AAGRAKNHTL ENRRSLDSED 180 SIMTSFGSGD RRKQRKLLNL FI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 190 | 197 | DRRKQRKL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49940.1 | 1e-57 | LBD family protein |