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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023535900.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
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Family | LBD | ||||||||
Protein Properties | Length: 171aa MW: 18872.4 Da PI: 7.9798 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 131.7 | 3e-41 | 12 | 111 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+l+r+C++ C++apyf +++pkkfa vhk+FGasnv+k+l+++pee+red+++sl+yeAear+rdPvyG++g i lq ++++l+++la XP_023535900.1 12 SCAACKLLKRRCTPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQTKMAELQHDLA 106 6********************************************************************************************** PP DUF260 96 llkee 100 l+k++ XP_023535900.1 107 LAKAR 111 99876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 171 aa Download sequence |
MRGCHDTRSS SSCAACKLLK RRCTPTCIFA PYFRSDEPKK FAKVHKVFGA SNVSKILTEV 60 PEEQREDTVN SLAYEAEARL RDPVYGCIGA IALLQTKMAE LQHDLALAKA RLARYAAANN 120 NYSSSTSLGV LENCVVNMSY GGLSFSGQSS DDISQYGYLC DFTHFPYPFQ A |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11090.1 | 2e-59 | LBD family protein |