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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023534778.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
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Family | LBD | ||||||||
Protein Properties | Length: 196aa MW: 21268.3 Da PI: 8.5833 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 125 | 3.7e-39 | 23 | 123 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrrkCa+dC++apyf++eq +++fa++hk+FGasnv+kll ++p +r +a+ s++yeA+ar+rdPvyG+v+++++lqqq++ l+++l XP_023534778.1 23 PCGACKFLRRKCAPDCIFAPYFCSEQsAARFAAIHKVFGASNVSKLLLHVPVPHRCEAVVSIAYEAQARIRDPVYGCVAHLFALQQQVAYLQTQL 117 7***********************9978******************************************************************* PP DUF260 95 allkee 100 +++++ XP_023534778.1 118 MQARAQ 123 999887 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence |
MASSTTANSH VSASASASPS PSPCGACKFL RRKCAPDCIF APYFCSEQSA ARFAAIHKVF 60 GASNVSKLLL HVPVPHRCEA VVSIAYEAQA RIRDPVYGCV AHLFALQQQV AYLQTQLMQA 120 RAQLAQTHMQ IQWTGIPKFP NYQSQVTNSA VSPQTSLESA ANNDEAQFQQ FPTKIPASCH 180 GDVGELQALA LRMMRN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42430.1 | 6e-66 | LBD family protein |