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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023534490.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
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Family | NF-YC | ||||||||
Protein Properties | Length: 229aa MW: 25966.1 Da PI: 9.2153 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 43.8 | 5.5e-14 | 119 | 208 | 10 | 99 |
NF-YC 10 iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 e++ + k ++P+ rikki + ++ +i ea l+ ka e+f+l++ ++ + ++++l ++++v++ + +dfl d vp++ XP_023534490.1 119 EEEEVQEKIYTFPMQRIKKITRDENSDFRINQEALFLVNKATEMFLLQFCKDAYACCARDRKKSLAYKHLSSVVSKRKRYDFLSDFVPEK 208 34444556779***********9999999**********************************************************986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence |
MASTKKSSTE IKSKEAGTSK PATKTTKTLN ARKSDKNDSK KKKKKIYSNK HSNNGSVKED 60 DAVFISAPGS ASEEEDAGEE RAETTSKKAK TSKSKVGKWN HVKKEENGYA EQEEEEEEEE 120 EEVQEKIYTF PMQRIKKITR DENSDFRINQ EALFLVNKAT EMFLLQFCKD AYACCARDRK 180 KSLAYKHLSS VVSKRKRYDF LSDFVPEKLK FEDAVKEIGM AESGKGEAS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 179 | 197 | RKKSLAYKHLSSVVSKRKR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07980.1 | 2e-31 | NF-YC family protein |