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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023533865.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 316aa MW: 36455.4 Da PI: 8.0495 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 63.4 | 2.4e-20 | 9 | 53 | 1 | 45 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 k i+n+ r++tfskR+n ++ KA+ELS+LCd++ +vi+ ++++ XP_023533865.1 9 KLISNEKSRKTTFSKRKNSLMRKAYELSTLCDVRTCVIVHGPNQS 53 569**************************************9874 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 316 aa Download sequence |
MGRGKLSMKL ISNEKSRKTT FSKRKNSLMR KAYELSTLCD VRTCVIVHGP NQSDQSPIHT 60 WPSSRDSVND MIASYKSNCL HKRTRKSFNL FDFFSDRKKK IESDMSKLRK DVAKARYPKW 120 DERLECLMEE QLRVLMVEID SKLDATKRRI ENVEERVSGG SNQTLNANMN KNQLISFEET 180 QPMMAYNQIQ AMPQDLQAGS SAVPMIQMDH EFENLNQFIY GSSLPQIHGN YFQNPNFCSD 240 PTNGMIMDST QSYSMCHYGV PLAPTHSIMP LSYMQLTDDQ MMMGCSSNSQ MGLPNASNQV 300 NDQLDYFNYE YFMKNF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G55690.1 | 8e-24 | M-type_MADS family protein |