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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023531745.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
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Family | LBD | ||||||||
Protein Properties | Length: 301aa MW: 33294.3 Da PI: 8.4315 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 92.9 | 3.7e-29 | 70 | 173 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C+vlr++C+++C ++p++ p++q++++ +++k++G++ +++l++a p++ r+++++sl++eA+ r+ +P+yG++g+++++++ql+q XP_023531745.1 70 SCNGCRVLRKGCSESCSIRPCLqwiktPQSQANATFFLAKFYGRAGLVNLINAGPDHLRPAVFKSLLFEACGRIVNPIYGSAGLLWSGSWQLCQD 164 6********************************************************************************************** PP DUF260 91 kaelallke 99 ++e++l ++ XP_023531745.1 165 AVEAVLKGA 173 **9988766 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 301 aa Download sequence |
MEVVKESFPV VSKKPENHRN WKTTIFLENQ LRKSLQKQNP PLFLSPSTFL PFCAQILLPY 60 SSIHHAMRIS CNGCRVLRKG CSESCSIRPC LQWIKTPQSQ ANATFFLAKF YGRAGLVNLI 120 NAGPDHLRPA VFKSLLFEAC GRIVNPIYGS AGLLWSGSWQ LCQDAVEAVL KGAPILSVSS 180 ETAASHMGPP LKDCDIRHVS KQQGAAPDSA LRKIKTRRRF KRSAPNKPMP EEEPVVVTEF 240 VFDDPTRVVS EPRCLKFELD SWVGHKSQEK DCSSDEAECL SVEGSAVGQG GDVELELSLG 300 L |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02550.1 | 2e-82 | LBD family protein |