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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023531527.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
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Family | LBD | ||||||||
Protein Properties | Length: 152aa MW: 16688.2 Da PI: 8.6977 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 147.3 | 4.3e-46 | 17 | 117 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+C++dCv+apyfpa+qp+kf vhk+FGasnv+kll++lpe++r+da+sslvyeA+ar+rdP+yG+vg+i+ lq+q++ l+++la XP_023531527.1 17 PCAACKLLRRRCTQDCVFAPYFPADQPHKFSSVHKVFGASNVTKLLQELPEQHRSDAVSSLVYEANARIRDPIYGCVGTISCLQRQVDALQQQLA 111 7********************************************************************************************** PP DUF260 96 llkeel 101 +++++l XP_023531527.1 112 MTQAQL 117 *99885 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 152 aa Download sequence |
MAKEMMKGSC KKGAPSPCAA CKLLRRRCTQ DCVFAPYFPA DQPHKFSSVH KVFGASNVTK 60 LLQELPEQHR SDAVSSLVYE ANARIRDPIY GCVGTISCLQ RQVDALQQQL AMTQAQLLHF 120 KMAQFSLASQ PSSTDDVLPS PPNTNVPSFT SL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G31320.1 | 1e-54 | LBD family protein |