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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023530278.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
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Family | NF-YC | ||||||||
Protein Properties | Length: 260aa MW: 28741.4 Da PI: 6.3399 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 178.2 | 7.9e-56 | 81 | 184 | 1 | 101 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 ql++fw++q iek+tdfknh+lPlarikki+kadedv+misaeaPvl+++ace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdifdfl XP_023530278.1 81 QLQTFWANQyqeIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVLFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFL 175 89******99999********************************************************************************** PP NF-YC 93 vdivprdel 101 vdivpr++l XP_023530278.1 176 VDIVPREDL 184 ******987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence |
MDQQGHGQPQ SMGAVGSGGQ IAYGSNLYHP GQITVGSTSG SVVTSVGGIQ STSQPGGAQL 60 GQHQLAYQHI HQQQQQQLQQ QLQTFWANQY QEIEKVTDFK NHSLPLARIK KIMKADEDVR 120 MISAEAPVLF ARACEMFILE LTLRSWNHTE ENKRRTLQKN DIAAAITRTD IFDFLVDIVP 180 REDLKDEVLT SIPRGSITVG GPGDALPYCY MPSQHAPQVG APGMIMGKPV MDPAIYAQQS 240 HPYMPPQMWQ HTQDQAPPDQ |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 154 | 160 | RRTLQKN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08970.3 | 2e-82 | NF-YC family protein |