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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023530211.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
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Family | LBD | ||||||||
Protein Properties | Length: 169aa MW: 18571.8 Da PI: 7.9929 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 141.7 | 2.3e-44 | 10 | 109 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrrkC ++Cv+apyfp+e+p+kfanvhk+FGasnv+kll+++++++reda++sl+yeAear++dPvyG+vg i+ lq+q+ +l+ el+ XP_023530211.1 10 PCAACKFLRRKCLPGCVFAPYFPSEEPQKFANVHKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQRELD 104 7*********************************************************************************************9 PP DUF260 96 llkee 100 +++++ XP_023530211.1 105 ATNAN 109 98765 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 169 aa Download sequence |
MSSSTYSNSP CAACKFLRRK CLPGCVFAPY FPSEEPQKFA NVHKIFGASN VSKLLNEVQP 60 HQREDAVNSL AYEAEARMKD PVYGCVGAIS ILQRQVIKLQ RELDATNANL IRYACSELPA 120 PSSSSQYARR SSSTSHVGSS STSSYGHYYS GLYFCGPCGD DHDKGEEHK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27650.1 | 4e-67 | LBD family protein |