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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023530040.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 209aa MW: 23977.8 Da PI: 9.6036 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 48.4 | 1.2e-15 | 11 | 50 | 3 | 42 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 i n+s r+ t+ kR++g+lKK +EL +LC+++++ i+fs+ XP_023530040.1 11 IVNDSARKATYKKRKKGLLKKLSELTTLCGIQACAIVFSP 50 789************************************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence |
MARKKVKLAY IVNDSARKAT YKKRKKGLLK KLSELTTLCG IQACAIVFSP YDSPPELWPS 60 VLGVQRVLSQ FKNMPEMEQS KKMVNQDTFL RQRIAKAEEQ LKKIRKENRE KEVTRLMFQI 120 LTGPEWLQGL TMGDLNDISW VIDETLKGIS KRIDSFKRLV PPPPQTGAWV MEVVSPEDGM 180 EFVGDDMGLS FEDHSYNSEN VIWSNAFFS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 3 | 25 | RKKVKLAYIVNDSARKATYKKRK |
2 | 17 | 32 | RKATYKKRKKGLLKKL |
3 | 22 | 26 | KKRKK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 1e-50 | M-type_MADS family protein |