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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023529412.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
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Family | SBP | ||||||||
Protein Properties | Length: 368aa MW: 40806.3 Da PI: 7.9454 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 133.7 | 6.2e-42 | 89 | 165 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC +dls+ ++yhrrhkvCe hsk+p+v++ g++qrfCqqCsrfh+l+efDe+krsCr+rL++hn+rrrk+q+ XP_023529412.1 89 CLVDGCVSDLSNYRDYHRRHKVCELHSKTPQVTIGGIKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQP 165 **************************************************************************997 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 368 aa Download sequence |
MDWNLKAPYW DFTQLEHDAS KNISTIGASS NFVEHRTTTS RDFSVDLKLG QVSHLGTKYV 60 ANKLKMAPSP SEPSKRARGC GTGAQPLSCL VDGCVSDLSN YRDYHRRHKV CELHSKTPQV 120 TIGGIKQRFC QQCSRFHSLE EFDEGKRSCR KRLDGHNRRR RKPQPESLSH YQGSPFIPFS 180 NSYVYPSSTT VANHSWCGIS NTKADASLHT QQHSTHFPDK HHMYLGSSSN DSIHKIPKQV 240 TFLQSDNPES LVCQPLDFSE NVGGRGKLLF DRFSNPGHES DCALSLLSSL QTRSSGVGLS 300 QPDQDSNLIS FMQPLDVSLG HHNSLDPLNS VLNGSVSNAD ISCSGMFQSA SDDGGREAPP 360 PSLPFQWQ |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 146 | 163 | KRSCRKRLDGHNRRRRKP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50670.1 | 1e-55 | SBP family protein |