![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_023529251.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
|
||||||||
Family | NF-YC | ||||||||
Protein Properties | Length: 268aa MW: 30132.8 Da PI: 6.3037 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 178.4 | 6.7e-56 | 81 | 185 | 1 | 102 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 ql++fw++q ie++tdfknh+lPlarikki+kadedv+misaeaPv+++kace+fileltlrsw+h+eenkrrtl+k+diaaa++rtd+fdfl XP_023529251.1 81 QLQVFWANQmqeIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFL 175 89******988889********************************************************************************* PP NF-YC 93 vdivprdelk 102 vdi+prdelk XP_023529251.1 176 VDIIPRDELK 185 *******975 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 268 aa Download sequence |
MDQSERSQHQ QQSQQAAGGV GAGQLPYSNP YQTAPMGASG TPAITIPPTQ QPSSFSNSPH 60 QLAFQQAQHF HQQQQQQQQQ QLQVFWANQM QEIEQTTDFK NHSLPLARIK KIMKADEDVR 120 MISAEAPVIF AKACEMFILE LTLRSWIHTE ENKRRTLQKN DIAAAISRTD VFDFLVDIIP 180 RDELKEEGLG ITKASIPVVG SPADLPYYYV PSQHPVSATG MIMGKQLDQA NMYSATAQQP 240 RPPIPFMPWP HTQAQQQQQQ QTQQQSDA |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 154 | 160 | RRTLQKN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G56170.1 | 2e-81 | NF-YC family protein |