PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023527962.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

SBP

Protein Properties

Length: 383aa MW: 40935.7 Da PI: 8.7827

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023527962.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	138.7	1.6e-43	81	156	1	76
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 +CqvegC++dls++k y++rhkvC++hsk+p+v+v+gleqrfCqqCsrfh+l efD++krsCrrrLa+hnerrrk+ XP_023527962.1 81 RCQVEGCKVDLSDVKAYYSRHKVCTMHSKSPKVIVAGLEQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKP 156 6*************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 383 aa Download sequence
MEMDCSSLTE SGGSSTSSPP NSSAESLNGL KFGHKIYFED VGIGELPKSG GGGSFSSSPL 60 IASTPTKKLR GGVVQPAQPP RCQVEGCKVD LSDVKAYYSR HKVCTMHSKS PKVIVAGLEQ 120 RFCQQCSRFH QLPEFDQGKR SCRRRLAGHN ERRRKPPPGS LLSTRYENSS RVGSFLMDFS 180 AYPKLTGKDV WSSSGMKASS ERVPGNQGIT SMGKYIPNPW QSNPSELLLP VSSAGGTSYS 240 GPGNPSGECI NGVTDSSCAL SLLSNQTWGS RNRTTPLEVN AALLNAEGAL VAQTTSAHAA 300 TNHFPMSMSM SSWSFKGNEA PASISLDLAS DLGLNHQVSQ ALTTSSFSGD VQFPNQGSRR 360 PYMELGQSAG AFDSTQQHLH WSL

Sequence ? help Back to Top

Protein Sequence Length: 383 aa Download sequence

MEMDCSSLTE SGGSSTSSPP NSSAESLNGL KFGHKIYFED VGIGELPKSG GGGSFSSSPL  60
IASTPTKKLR GGVVQPAQPP RCQVEGCKVD LSDVKAYYSR HKVCTMHSKS PKVIVAGLEQ  120
RFCQQCSRFH QLPEFDQGKR SCRRRLAGHN ERRRKPPPGS LLSTRYENSS RVGSFLMDFS  180
AYPKLTGKDV WSSSGMKASS ERVPGNQGIT SMGKYIPNPW QSNPSELLLP VSSAGGTSYS  240
GPGNPSGECI NGVTDSSCAL SLLSNQTWGS RNRTTPLEVN AALLNAEGAL VAQTTSAHAA  300
TNHFPMSMSM SSWSFKGNEA PASISLDLAS DLGLNHQVSQ ALTTSSFSGD VQFPNQGSRR  360
PYMELGQSAG AFDSTQQHLH WSL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42200.1	1e-53	SBP family protein