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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023526848.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
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Family | SBP | ||||||||
Protein Properties | Length: 390aa MW: 43454.5 Da PI: 7.364 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 129.8 | 1e-40 | 146 | 223 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC++ l +ak+yhrrh+vCe+hskap+v+v gleqrfCqqCsrfh +sefD++krsCrrrLa+hnerrrk+++ XP_023526848.1 146 RCQVEGCHVALVNAKDYHRRHRVCEMHSKAPKVVVVGLEQRFCQQCSRFHVISEFDDSKRSCRRRLAGHNERRRKSSH 223 6**************************************************************************986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 390 aa Download sequence |
MEMEICANLM GHSNPTRDQT PNATNLSCPN NIWDFNSSRF DLDWATANSL CPDTTRSQPM 60 SAHALWLHPH DADARHHQFL YAADHQRAHF HPDPHLMCLK LGKRHYFEDA TAPSVVGGFA 120 TVGKRGKALY GGDGGPYGPV PTTVPRCQVE GCHVALVNAK DYHRRHRVCE MHSKAPKVVV 180 VGLEQRFCQQ CSRFHVISEF DDSKRSCRRR LAGHNERRRK SSHESVAARN CTQENKPMTG 240 SIAYIPSPTG RALSLLSSKK ETWATSSELS LRSSAALREL IAENRAAILA RQLILDRDWH 300 LNHAAATDDF GGGGGGVGFH QQQGLYCEQQ QQQQSWEGMN ENGGAHVTLD LMQAPSTAFG 360 MLSVRGKSKE EDEECCELWN SFHDHDSHVV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43270.1 | 5e-36 | SBP family protein |