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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023526283.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
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Family | LBD | ||||||||
Protein Properties | Length: 242aa MW: 26038.8 Da PI: 8.1557 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 124.7 | 4.7e-39 | 35 | 134 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrrkC+++C++apyf +eq + +fa+vhk+FGasnv+kll ++pe++r da+ +++yeA+ar+r+Pv G+v++i++lqqq ++l++el XP_023526283.1 35 PCGACKFLRRKCTPECIFAPYFDSEQgTTHFAAVHKVFGASNVSKLLLHIPEHKRLDAAITICYEAQARVREPVFGCVAHIFALQQQAARLQVEL 129 7***********************9988******************************************************************* PP DUF260 95 allke 99 a+l++ XP_023526283.1 130 AYLQA 134 *9886 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence |
MKERQESKAE MSSRHGGGGC KEGNGGSSSN GSGGPCGACK FLRRKCTPEC IFAPYFDSEQ 60 GTTHFAAVHK VFGASNVSKL LLHIPEHKRL DAAITICYEA QARVREPVFG CVAHIFALQQ 120 QAARLQVELA YLQAYLAASE LSRTAPHPQA QPQDLVKPTI PSIVSLPLDC SSLPSAASDL 180 SLLIDPVEQA SPAKLQSPLE FCQIRSNNFP SMGSIDQQIV QKQLSTMQRI GASLFPYVPK 240 GA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45420.1 | 7e-58 | LBD family protein |