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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023526169.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 417aa MW: 46967.9 Da PI: 3.865 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 61.2 | 1.2e-19 | 10 | 56 | 2 | 50 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 i+n r +tf kR++ ++KKA+ELS+LCd++ +v+i+s ++++++ XP_023526169.1 10 LISNPKSRRTTFQKRKKSLMKKAYELSTLCDVQTCVVIASD--EFQTWP 56 699***********************************995..678887 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 417 aa Download sequence |
MGRGTLSLKL ISNPKSRRTT FQKRKKSLMK KAYELSTLCD VQTCVVIASD EFQTWPSDRN 60 QVEAMIRSYK SQSFCKHSAK SSYDLNQFFS DRKNKIVTET SKLRDKVQKS KDTNSDHCLD 120 SLSEHQLKVL LATLDSKIGV ADSMIEFMEA DYDYLIEGAV EISSIDKQTL SPLETEASPK 180 LNISELDMEA NYDHLIGGDT EILSVDTQTF SPFETELSTE FDVSEMFMES NYDPLIEGDA 240 EIVSIDTQTF SPFETELSTE FDVSEMFMES NYDNLIEGAA EIVSNDTQTF SPFETEASPE 300 FDVSEMLMEA NYDPLIEGAA EIVSIDTQTS SPLETESSPE LNLSEIFMEA IHDDLIEEPT 360 EIPTLNSLET EVFSELDISE LLAGSGEFEF NVEGFQSLLE DEDHQTLAEN HSFIFQS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58890.1 | 2e-17 | M-type_MADS family protein |