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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023525656.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
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Family | LBD | ||||||||
Protein Properties | Length: 196aa MW: 21325.3 Da PI: 6.9697 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 137.5 | 4.6e-43 | 36 | 135 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+C+++Cvlapyfp ++p kf ++h++FGasn++kll++lpe++r da+sslvyeA ar+rdPvyG++g i +lq+q+++l+ae+a XP_023525656.1 36 PCAACKTLRRRCTEKCVLAPYFPPSDPLKFTIAHRIFGASNIIKLLQDLPESQRADAVSSLVYEASARIRDPVYGCAGAICHLQKQINELQAEVA 130 7********************************************************************************************** PP DUF260 96 llkee 100 ++++e XP_023525656.1 131 KTHAE 135 *9987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence |
MDAKSSPTSN IFRSQSPSSS PLPPPPSVQA GLVVSPCAAC KTLRRRCTEK CVLAPYFPPS 60 DPLKFTIAHR IFGASNIIKL LQDLPESQRA DAVSSLVYEA SARIRDPVYG CAGAICHLQK 120 QINELQAEVA KTHAELVNMQ CHQANLVALI CKELTQTPAP TPPPPDHCSL DNNFSSATPQ 180 SYPLFDDSNI WEALWT |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 1e-66 | LBD family protein |