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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023525593.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
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Family | SBP | ||||||||
Protein Properties | Length: 1060aa MW: 117620 Da PI: 8.741 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 129.2 | 1.5e-40 | 141 | 218 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C++dls+ak+yhrrhkvC+ hsk++++lv++l+qrfCqqCsrfh lsefD++krsCrrrLa+hn rrrk+q+ XP_023525593.1 141 MCQVDNCKEDLSNAKDYHRRHKVCQLHSKSTKALVANLMQRFCQQCSRFHPLSEFDDGKRSCRRRLAGHNWRRRKTQP 218 6**************************************************************************997 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 1060 aa Download sequence |
MDDLGAQVVP PVFIHQTFPT HYTGLPSTSN KRPLSYHNHL HHYSHTWNPK TWDWDTDTFL 60 IKPSDPALLH SDALSSKPHF LPATPLPSTS NNNTLHLQDD QTLRLNLGPA PNFNCVEQPL 120 SKPPKKLRPD PGSPAAATYP MCQVDNCKED LSNAKDYHRR HKVCQLHSKS TKALVANLMQ 180 RFCQQCSRFH PLSEFDDGKR SCRRRLAGHN WRRRKTQPED VTSRLTPPGS RGPPSGGKLD 240 IFSLLAVLAR AQGKNEGQSV ESLLSANSDQ LIQTLTKVNS LPLPAEFAAK VPNLENFMGE 300 ASPGSSLQHQ NKFNRNPSSS STMDLLTVLS ATLVASAPDA LAMLSQKSSP SSASEKTRSS 360 CPSGSDLQNR PLEFPSVGGE RSSTSYQSPV EESDGQVQGS RVGLPLQLFS SSPEHDTPLN 420 LTASRKYFSS DSSNPIEERS PSSSPPLLQK LFPVQRSEET SSNRKIPIRK EVSGIVEVPK 480 PPSSAMPFEL FRESDRGGGP NLLHTVPYQA GYTSSGSDHS PSNLNSDAQD RTGRISFKLF 540 DKDPSQFPGT LRTQIYNWLS NCPSEMESYI RPGCVVLSIY MSMSSIAWEQ LEENLVLHVK 600 SLVHGENLEF WRSGRFLVYS GRQLASHKDG KIRLNKSSKA WSNPELISVS PLAVVSGQKT 660 SFLLRGRNLK NPCTKIHCTF MGGYISKEVM GLSRQGTYDE IHSGNYKIGD ASPSTLGRCF 720 IEVENGFRGN SFPVIIADSA ICKELRHLES VFDEFRVTDI SSESHSCVPS QLRLKDETLQ 780 FLNELGWLFQ RERSSSKLDN PIFLIRRFKF LLTFSVERDF CALLKTLLDI LVKKCLITNG 840 LSMKSLEMIS EVQLLNRAVK RRCRPMVDLL VHYYVSGFGD EEKKYLFPPN VIGPGRITPM 900 HLAASMADSD DMVDALTNDP LEIGLNCWSS QVDASGKSAR GYALMRGNHS CNELVDRKLG 960 DRKKGEVSVR VGNEIEEVGV SSSERSRVQG RCCSRCAVVA GRCYKRVPGS GTHRLLHRPY 1020 IHSMLAIGAV CVCVCLFLRG SPDIGLVAPF KWENLRYGTI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 857 | 862 | RAVKRR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G20980.1 | 0.0 | SBP family protein |