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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023524859.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 360aa MW: 40839.2 Da PI: 6.5086 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 65.2 | 6.9e-21 | 10 | 53 | 2 | 45 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 + e++ rqvt+skRr+gilKKA EL +LCd+++++++fs+tg+ XP_023524859.1 10 KLESTGSRQVTYSKRRHGILKKARELAILCDIDILLLMFSPTGR 53 5688999***********************************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 360 aa Download sequence |
MGRVKLKIKK LESTGSRQVT YSKRRHGILK KARELAILCD IDILLLMFSP TGRPTLYQGE 60 RSNIEEVITK FSQLTPQERA KRKLESLEAL KKTFKKLDHD VNIKDFVGSS SQDSEQELTN 120 EVSILRDQIA DSHKRLSYWR NLDNINNIEH LQKMEDLARE SLNQMRLHKE NVRRHQILSQ 180 DFTCQYPGGG MSLPLMMDEM QGTQPLLWLP NYCSQQIALP NEPSFLQPGD VECSMATSFS 240 SFPSFFNPGK QLEAGISGQV DSMPQGDGGL NELSGTSCST LQLGDQYPYP TCDVSNFQDD 300 KKLNLEMEMN LHANCINNQL NGKLELSRAL YGDDQHPWAS IPGPCSIPMY QSNAYHHQPN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18750.1 | 2e-80 | M-type_MADS family protein |