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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023524776.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
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Family | LBD | ||||||||
Protein Properties | Length: 276aa MW: 31433.1 Da PI: 4.5901 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 134.1 | 5.3e-42 | 10 | 108 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 aCa+Ck++rr+C+kdC+lapyfpa+qpk f+n+h+lFG++n++++lk++p+++++++m+s++ye+++r r PvyG++gv+++l+ q++q+++el+ XP_023524776.1 10 ACASCKYQRRRCSKDCPLAPYFPADQPKMFQNAHRLFGVRNIMNILKQVPPSQKDETMTSIIYESNMRSRFPVYGCCGVLWQLHYQIQQVSEELQ 104 7*********************************************************************************************9 PP DUF260 96 llke 99 ++k+ XP_023524776.1 105 QVKA 108 9986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 276 aa Download sequence |
MTMKGGTTQA CASCKYQRRR CSKDCPLAPY FPADQPKMFQ NAHRLFGVRN IMNILKQVPP 60 SQKDETMTSI IYESNMRSRF PVYGCCGVLW QLHYQIQQVS EELQQVKARV SMMKDLGIAD 120 DNDVVFPVYT QQQQQQQQQQ QQQYDCLGVD GNDLLFGNVN NGGVYVDNDD HNNIGSMLKE 180 LRIQQHYNDN FGINVESMLM QSNLIPAVLQ HEMEISHDYD EIPFDTIADD RQSYVESQEA 240 CNSSAESTFK DVSEPSAEYL SRTDLKNAAA CFSLTS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47870.1 | 7e-46 | LBD family protein |